With Mini Pecan Pies, everyone gets their own little treat. Made with an almond flour and maple syrup crust and a pecan-coconut filling, these individual pies are the perfect fall dessert.

Dessert, but better
Pecans have a way of elevating any dessert, and these healthy mini pecan pies are no exception. They capture all the classic flavors of pecan pie while using ingredients that feel lighter and more wholesome. The pies are baked in a muffin tin for perfectly portioned servings—no slicing disputes, just small, satisfying treats.
These mini pies are great for gatherings, potlucks, or an easy after-school dessert. They taste indulgent while relying on naturally sweet ingredients and almond flour for the crust, so you get a crowd-pleasing dessert that doesn’t feel overly heavy.

Ingredients in mini pecan pies
The recipe is split into two parts: crust and pecan filling. The crust uses almond flour, cinnamon and maple syrup for flavor and texture, while the filling combines coconut oil, coconut sugar, almond milk and plenty of pecans for the classic sticky, nutty topping.
Crust:
- Almond flour
- Baking soda
- Cinnamon
- Salt
- Egg
- Maple syrup
- Coconut oil
Pecan Filling:
- Coconut oil
- Maple syrup
- Coconut sugar
- Vanilla
- Almond milk
- Pecans
Kitchen tools needed to create this pecan dessert
Keep the tool list simple: a muffin tin and basic mixing equipment are all you need. Accurate measuring helps ensure consistent results.
- Muffin tin (standard 12-cup)
- Nonstick spray
- Large mixing bowl
- Small mixing bowl
- Stirring utensil
- Saucepan
- Measuring cups and spoons

How to make healthy mini pecan pies
These individual pies are made the same way as a full-size pecan pie, but the crust and filling are divided among 12 muffin cups. Start by preparing and baking the crusts, then make the filling and bake again briefly to set the topping.
Preheat the oven to 350°F (175°C) and grease a standard 12-cup muffin tin.
In a large bowl, combine the almond flour, baking soda, cinnamon, and salt.
In a smaller bowl, whisk together the egg, maple syrup, and coconut oil. If the coconut oil firms up, it can be because the egg or maple syrup were cold—warming them slightly will help.
Combine the wet and dry ingredients, mixing until evenly incorporated. Roll the dough into 12 even balls and press one into each muffin cup, shaping the dough up the sides to form a cup that reaches about halfway up the tin, not to the top.
Bake the crusts for about 14 minutes, until they start to turn golden brown.
While the crusts bake, make the filling. In a small saucepan, combine the coconut oil, maple syrup, and coconut sugar over medium-high heat. Once it begins to bubble, reduce to medium-low and let it boil gently for 2 minutes while stirring constantly.
Remove the pan from the heat and stir in the vanilla, almond milk, and chopped pecans until everything is well coated.
Divide the pecan mixture evenly among the baked crusts, mounding slightly if needed, then return the muffin tin to the oven for another 15 minutes to set the topping.
Allow the mini pies to cool in the pan for at least 20 minutes before removing and serving. The cooling time helps the filling thicken and hold its shape.
A healthier autumn dessert
I enjoy reimagining classic desserts with more nutrient-dense ingredients. For these mini pecan pies, a few simple swaps keep the flavor intact while offering a lighter profile:
- Almond flour: Used instead of white flour for a tender, nutty crust.
- Maple syrup: A natural sweetener that brings depth and warmth.
- Coconut oil: Chosen for its baking stability and flavor.
- Coconut sugar: A lower-glycemic substitute for granulated sugar.
- Almond milk: A lighter dairy alternative that complements the nut flavors.

Substitution options
If you need to swap ingredients, these alternatives work well and keep the recipe approachable.
- Maple syrup: Honey or molasses can be used as natural sweeteners.
- Coconut oil: Substitute with a similar baking oil in a 1:1 ratio.
- Coconut sugar: Brown sugar is an acceptable alternative.
- Almond milk: Any plant or dairy milk—such as cashew, oat, or cow’s milk—will work.
Storing mini pecan pies
Store the mini pies in an airtight container in the refrigerator for up to five days. They keep well chilled and remain flavorful for several days—if they last that long.
Indulge in more pecan pie desserts
If you want more pecan-based treats, consider pecan pie bars, pecan brownies, or adding pecans to cookies and granola for extra crunch and flavor.
Recipe by Erin Morrissey. Photos by the original photographer.
Mini Pecan Pies (Healthy)
With Mini Pecan Pies, everyone gets their own little treat. Made with an almond flour and maple syrup crust and a pecan-coconut filling, these are the fall desserts you’ll reach for again and again.
Cook: 30
Total: 45 minutes
Ingredients
Crust:
- 2 cups almond flour
- 1 tsp baking soda
- 1/2 tsp cinnamon
- 1/2 tsp salt
- 1 egg, room temperature
- 2 tbsp maple syrup
- 2 tbsp coconut oil
Pecan Filling:
- 1/3 cup melted coconut oil
- 1/4 cup maple syrup
- 2/3 cup coconut sugar
- 1 tsp vanilla
- 1 tbsp almond milk (or any milk)
- 1 3/4 cups chopped pecans
Instructions
- Preheat oven to 350°F and grease a standard 12-cup muffin tin.
- In a large bowl, combine almond flour, baking soda, cinnamon, and salt.
- In a small bowl, whisk together the egg, maple syrup, and coconut oil. If the oil firms up, warm the ingredients slightly.
- Add the wet ingredients to the dry and stir until combined.
- Roll into 12 even balls and press one into each muffin cup, forming a cup that reaches about halfway up the sides.
- Bake for 14 minutes, until the crusts begin to turn golden brown.
- While crusts bake, prepare the filling.
- In a small saucepan, combine coconut oil, maple syrup, and coconut sugar over medium-high heat. Once bubbling, reduce to medium-low and boil for 2 minutes, stirring constantly.
- Remove from heat, stir in vanilla, almond milk, and pecans until coated.
- Divide the pecan mixture evenly among the baked crusts, mounding slightly as needed.
- Return to the oven for 15 minutes to set the topping.
- Let cool at least 20 minutes before serving.
- Store leftovers in the refrigerator.
Category: dessert, gluten-free, dairy-free
Method: oven
Cuisine: American
Diet: Gluten Free